代表性项目：

1. 内蒙古自治区科技厅，自然科学基金重大项目，利用现代基因组编辑技术（CRISPR/Cas9）应用于马铃薯抗晚疫病育种及其抗病机理研究，2020.06-2024.06，50.0万元；

2. 内蒙古自治区科技厅，科技计划项目，利用现代精准分子育种技术培育优质抗病马铃薯新品种（系），2020.05-2024.06，452.0万元；

3. 国家自然科学基金委员会，面上项目，马铃薯细胞嵌合体引起生物量增加的成因与发生机制研究，2021.01-2024.12、60.0万元；

4. 国家自然科学基金委员会，面上项目，减数分裂同源染色体配对异常导致油菜种内杂交产量劣势的机制研究及种质创新，2019.01-2020.12、25.0万元；

5. 内蒙古自治区科技厅，重大专项，利用现代基因组编辑（CRISPR/ Cas9）技术选育马铃薯支链淀粉含量高和抗低温糖化新品种，2016.11-2019.10，600万元；

6. 国家重点研发计划项目子课题，油菜染色体精准辨认技术及在种质创新中的运用，2016.01-2020.12，50.0万元；

7. 国家自然科学基金委员会，地区项目，马铃薯现代细胞遗传学体系的建立及其在相关研究中的应用，2016.01-2019.12、51.6万元；

8. 内蒙古自治区科技厅，科技创新引导奖励资金项目，利用现代细胞遗传学和染色体工程技术应用于马铃薯育种，2016.01-2017.12、80.0万元；

9. 国家自然科学基金委员会，面上项目，异源三倍体在多倍体形成中的作用和及其发生规律研究，2015.01-2018.12、80.0万元；

10. 内蒙古自治区科技厅，面上项目，栽培马铃薯同源四倍体减数分裂行为研究，2014.01-2016.12，6.0万元；

11. tyc1286太阳成集团，启动基金，马铃薯现代细胞遗传学体系的建立及其相关研究中的应用。2014/01-2016/12，200.0万元；

代表性论文：

1. Zhao KL#, Jin NZ, Madadi M, Wang YM, Wu L, Xu ZJ, Wang JX, Tang SW, Wang YT, Peng LC, Xiong ZY*. Incomplete genome doubling enables to consistently enhance plant growth for maximum biomass production by altering multiple transcript co‑expression networks in potato. Theoretical and Applied Genetics. 2022, 135(2): 461-472.  (IF=5.7，一区)

2. Madadi M#, Zhao KL#, Wang YM, Wang YT, Tang SW, Xia T, Jin NZ, Xu ZJ, Li GH, Qi Z, Peng LC, Xiong ZY*. Modified lignocellulose and rich starch for complete saccharification to maximize bioethanol in distinct polyploidy potato straw. Carbohydr Polym. 2021, 265:118070.  (IF=9.3，一区)

3. Xiong ZY#，*, Gaeta RT, Edger PP, Cao Y, Zhao KL, Zhang S, J. Pires C*. Chromosome inheritance and meiotic stability in allopolyploid Brassica napus. G3 journal. 2021, 11: doi: 10.1093/g3journal/jkaa011.

4. Bird KA#, Niederhuth CE, Ou S, Gehan M, J. Pires C , Xiong ZY*, VanBuren R*, Edger PP*. Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. New Phytologist. 2021, 230: 354-371. doi: 10.1111/nph.17137. (IF=10.2, 一区)

5. Chen JJ#, Xiong ZY, Miller DE, Yu ZL, McCroskey S, Bradford WD, Cavanaugh AM ,  Jaspersen  SL. The role of gene dosage in budding yeast centrosome scaling and spontaneous diploidization. PLoS Genet. 2020,16(12):e1008911.

6. Ding YJ#, Mei JQ, Wu QN, Xiong ZY, Li YH, Shao CG, Wang L, Qian W. Synchronous improvement of subgenomes in allopolyploid: a case of Sclerotinia resistance improvement in Brassica napus. Mol Breeding. 2019, 39: 10-19.

7. Colle M#, Courtney P. L, Wai CM, Shujun Ou, Kevin AB, Wang J, Wisecaver JH, Yocca AE, Alger E, Tang HB, Xiong ZY, Callow P, Ben-Zvi G, Brodt A , Baruch K, Swale T, Shiue L, Song GQ, Childs KL , Schilmiller A, Vorsa N, Buell C R, VanBuren R, Jiang N and Edger PP. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. GigaScience, 2019, 8: 1-15.

8. Edger PP#, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. Am J Bot. 2018, 105(3):463-469.

9. Edger PP#, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, Mower JP, Slovin JP, Hytönen T, Jiang N, Childs KL, Knapp SJ. Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.Gigascience. 2018, 7(2):1-7.

10. Xu Zhijun#, Xie Bei, Wu Tian, Xin Xiaoxia, Mang Lingyu, Tan Guangxuan, Xiong Zhiyong*. Karyotyping and identifying all of the chromosomes of allopolyploid Brassica juncea using multicolor FISH.The Crop Journal. 2016, 4: 266-274.

11. Li QF#, Zhou QH, Mei JQ, Zhang YJ, Li JN, Li ZY, Ge XH, Xiong ZY, Huang YJ, Qian W. Improvement of Brassica napus via interspecific hybridization between B. napus and B. Oleracea. Mol Breeding. 2014, DOI 10.1007/s11032-014-0153-9

12. Heneen WK#, Geleta M, Brismar K, Xiong ZY, Pires JC,  Hasterok R, Stoute AI, Scott RJ, King GJ and Kurup  S. Seed colour control, homoeology and linkage groups of the C-genome chromosomes revealed in developed Brassica rapa – B. oleracea monosomic alien addition lines. Ann Bot. 2012, 109:1227-1242.

13. Yan X#, Zhang L, Chen B, Xiong ZY, Chen C, Wang L, Yu J, Lu C, Wei W*. Functional Identification and Characterization of the Brassica Napus Transcription Factor Gene BnAP2, the Ortholog of Arabidopsis Thaliana APETALA2. PLoS One. 2012, 7. Epub 2012.

14. Wang X#, Wang H#, Wang J#, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z. The genome of the mesopolyploid crop species Brassica rapa. Nat Genet. 2011, 43:1035-1039.

15. Zuccolo A#, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudma D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, Depamphilis CW*, Wing RA, Leebens-Mack J. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biol. 2011, 12: R48.

16. Xiong ZY#, Gaeta RT, Pires JC*. Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus. Proc Natl Acad Sci USA. 2011, 108: 7908-7913. (IF=9.737，一区);（ESI高被引用论文）

17. Navabi ZK#, Stead KE, Pires JC, Xiong ZY, Sharpe A, Parkin IAP, Good AG*. Analysis of B-genome chromosome introgression in interspecific hybrids of Brassica napus ´ B. carinata. Genetics. 2011, 187: 659-673.

18. Xiong, ZY#, and J. C. Pires*. Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors. Genetics. 2011, 187: 37-49. (IF=4.38，二区)；（引用次数100余次）

19. Navabi ZK#, Parkin IA, Pires JC, Xiong ZY, Thiagarajah MR, Good AG, Rahman MH*.  Introgression of B-genome chromosomes in a doubled haploid population of Brassica napus x B. carinata. Genome. 2010, 53: 619-629.

20. Xiong ZY#, Kim JS, Pires JC*. Integration of genetic, physical, and cytogenetic maps for Brassica rapa chromosome A7. Cytogenet Genome Res. 2010, 129(1-3):190-198.

21. Lim KY#, Soltis DE, Soltis PS, Tate J, Matyasek R, Srubarova H, Kovarik A, Pires JC, Xiong ZY, Leitch AR. Rapid Chromosome Evolution in Recently Formed Polyploids in Tragopogon (Asteraceae). PLos ONE. 2008, 3: 3353.

22. Liu Y#, Xiong ZY, He YG, Shewry PR, He GY*. Genetic diversity of HMW glutenin subunit in Chinese common wheat (Triticum aestivum L.) landraces from Hubei province. Genet Resour Crop Evol. 2007, 54: 865-874.

23. He GY#, Zhang JR, Li KX, Xiong ZY, Chen MG, Chang JL, Wang YS, Yang GX*, Barnabas B. An improved system to establish highly embryogenic haploid cell and protoplast cultures from pollen calluses of maize (Zea mays L.). Plant Cell, Tissue and Organ Culture. 2006, 86:15–25.

24. Tan GX#, Xiong ZY, Jin HJ, Li G, Zhu LL, Shu LH, He GC*. Characterization of interspecific hybrids between Oryza sativa L. and three wild rice species of China by genomic in situ hybridization. Journal of Integrative Plant Biology. 2006, 48: 1077-1083.

25. Xiong ZY#, Tan GX#, He GY, He GC, Song YC*. Cytogenetic comparisons between A and G genomes in Oryza using genomic in situ hybridization. Cell Res. 2006, 16:260-266.

26. Xiong ZY#, Liu Y, He YG, Song YC, Li KX He GY*. Heterozygosity of Knob-Associated Tandem Repeats and Knob Instability in Mitotic Chromosomes of Zea (Zea mays L. and Zea diploperennis Iltis Doebley). Journal of Integrative Plant Biology. 2005, 47: 1345-1351.

27. Xiong ZY#, Gao Y, He GY, Gu MG, Guo LQ, Song YC*. Knob-associated tandem repeats on mitotic chromosomes in Zea diploperennis, maize and their hybrids. Chinese Science Bulletin. 2004, 49: 1354-1357.

28. Xiong ZY#, Tan GX, You AQ, He GY, She CW, Song YC*. Comparative physical mapping of rice BAC clones linked to resistance genes Glh, Bph-3 and xa-5 in Oryza sativa L. and O. granulata Nees et Arn. Ex Watt.. Chinese Science Bulletin. 2004, 49: 591-596.

29. She CW#, Liu JY, Xiong ZY, Song YC*. Karyotype analysis of Psophocarpus tetragonolobus (L.) DC by chromosome banding and fluorescence in situ Hybridization. Caryologia. 2004, 57: 387-394.

30. Liu JY#, She CW, Hu ZL, Xiong ZY, Liu LH, Song YC*. A new chromosome fluorescence banding technique combining DAPI staining with image analysis in plants. Chromosoma. 2004, 113: 16-21.

31. Han YH#, Li LJ, Song YC*, Li ZY, Xiong ZY, Li DY. Physical mapping of the 5S and 45S rDNA in teosintes. Hereditas. 2002, 137: 16-19.

32. Li ZY#, Qin R, Jin WW, Xiong ZY, Song YC*. FISH analysis of pachytene chromosome and DNA fiber of telomere sequence in rice (Oryza sativa L. indica). Yi Chuan Xue Bao. 2005, 32: 832-836.

33. Jin WW#, Yang Z Ning SB, Li ZY, Xiong ZY, Song YC*. Chromosomal localization of programmed cell death suppressor OsDad-1 in rice and Maize. Development & reproductive Biology. 2001, 10: 47-52.

34. Xiong ZY#, Xia FJ*, Lu SG. The protein classification of fine Rapeseed seed drags. Journal of Wuhan Botanical Research. 2001, 19: 259-261.